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Studying seabird diet through genetic analysis of faeces: a case study on Macaroni Penguins (Eudyptes chrysolophus)

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Deagle, BE and Gales, NJ and Evans, K and Jarman, SN and Robinson, S and Trebilco, R and Hindell, MA (2007) Studying seabird diet through genetic analysis of faeces: a case study on Macaroni Penguins (Eudyptes chrysolophus). PLOS One, 2 (9). p. 1. ISSN 1932-6203

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Abstract

Determination of seabird diet usually relies on the analysis of stomach-content remains obtained through
stomach flushing; this technique is both invasive and logistically difficult. We evaluate the usefulness of DNA-based faecal
analysis in a dietary study on chick-rearing macaroni penguins (Eudyptes chrysolophus) at Heard Island. Conventional
stomach-content data was also collected, allowing comparison of the approaches. Methodology/Principal Findings. Preyspecific
PCR tests were used to detect dietary DNA in faecal samples and amplified prey DNA was cloned and sequenced. Of
the 88 faecal samples collected, 39 contained detectable DNA from one or more of the prey groups targeted with PCR tests.
Euphausiid DNA was most commonly detected in the early (guard) stage of chick-rearing, and detection of DNA from the
myctophid fish Krefftichthys anderssoni and amphipods became more common in samples collected in the later (cre`che) stage.
These trends followed those observed in the penguins’ stomach contents. In euphausiid-specific clone libraries the proportion
of sequences from the two dominant euphausiid prey species (Euphausia vallentini and Thysanoessa macrura) changed over
the sampling period; again, this reflected the trend in the stomach content data. Analysis of prey sequences in universal clone
libraries revealed a higher diversity of fish prey than identified in the stomachs, but non-fish prey were not well represented.
Conclusions/Significance. The present study is one of the first to examine the full breadth of a predator’s diet using DNAbased
faecal analysis. We discuss methodological difficulties encountered and suggest possible refinements. Overall, the
ability of the DNA-based approach to detect temporal variation in the diet of macaroni penguins indicates this non-invasive
method will be generally useful for monitoring population-level dietary trends in seabirds.

Item Type: Article
Journal or Publication Title: PLOS One
Publisher: Public Library Science
Page Range: p. 1
ISSN: 1932-6203
Identification Number - DOI: 10.1371/journal.pone.0000831
Date Deposited: 07 Apr 2008 14:41
Last Modified: 18 Nov 2014 03:36
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