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Systematic, continental scale temporal monitoring of marine pelagic microbiota by the Australian Marine Microbial Biodiversity Initiative

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Brown, MV, van de Kamp, J, Ostrowski, M, Seymour, JR, Ingleton, T, Messer, LF, Jeffries, T, Siboni, N, Laverock, B, Bibiloni-Isaksson, J, Nelson, TM, Coman, F, Davies, CH, Frampton, D, Rayner, M, Goossen, K, Robert, S, Holmes, B, Abell, GCJ, Craw, P, Kahlke, T, Sow, SLS, McAllister, K, Windsor, J, Skuza, M, Crossing, R, Patten, N, Malthouse, P, van Ruth, PD, Paulsen, I, Fuhrman, JA, Richardson, A, Koval, J, Bissett, A, Fitzgerald, A, Moltmann, T and Bodrossy, L 2018 , 'Systematic, continental scale temporal monitoring of marine pelagic microbiota by the Australian Marine Microbial Biodiversity Initiative' , Scientific Data, vol. 5 , pp. 1-10 , doi: 10.1038/sdata.2018.130.

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Abstract

Sustained observations of microbial dynamics are rare, especially in southern hemisphere waters. The Australian Marine Microbial Biodiversity Initiative (AMMBI) provides methodologically standardized, continental scale, temporal phylogenetic amplicon sequencing data describing Bacteria, Archaea and microbial Eukarya assemblages. Sequence data is linked to extensive physical, biological and chemical oceanographic contextual information. Samples are collected monthly to seasonally from multiple depths at seven sites: Darwin Harbour (Northern Territory), Yongala (Queensland), North Stradbroke Island (Queensland), Port Hacking (New South Wales), Maria Island (Tasmania), Kangaroo Island (South Australia), Rottnest Island (Western Australia). These sites span ~30° of latitude and ~38° longitude, range from tropical to cold temperate zones, and are influenced by both local and globally significant oceanographic and climatic features. All sequence datasets are provided in both raw and processed fashion. Currently 952 samples are publically available for bacteria and archaea which include 88,951,761 bacterial (72,435 unique) and 70,463,079 archaeal (24,205 unique) 16 S rRNA v1-3 gene sequences, and 388 samples are available for eukaryotes which include 39,801,050 (78,463 unique) 18 S rRNA v4 gene sequences.

Item Type: Article
Authors/Creators:Brown, MV and van de Kamp, J and Ostrowski, M and Seymour, JR and Ingleton, T and Messer, LF and Jeffries, T and Siboni, N and Laverock, B and Bibiloni-Isaksson, J and Nelson, TM and Coman, F and Davies, CH and Frampton, D and Rayner, M and Goossen, K and Robert, S and Holmes, B and Abell, GCJ and Craw, P and Kahlke, T and Sow, SLS and McAllister, K and Windsor, J and Skuza, M and Crossing, R and Patten, N and Malthouse, P and van Ruth, PD and Paulsen, I and Fuhrman, JA and Richardson, A and Koval, J and Bissett, A and Fitzgerald, A and Moltmann, T and Bodrossy, L
Keywords: marine metagenome, time series, taxonomic diversity, national reference station
Journal or Publication Title: Scientific Data
Publisher: Nature Publishing Group
ISSN: 2052-4463
DOI / ID Number: 10.1038/sdata.2018.130
Copyright Information:

Copyright 2018 The AuthorLicensed under Creative Commons Attribution 4.0 International (CC BY 4.0)https://creativecommons.org/licenses/by/4.0/

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