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Complete genomic sequence of bacteriophage J2-1: a novel Pseudoalteromonas phenolica phage isolated from the coastal water of Qingdao, China

Liu, Q, Han, Y, Wang, D, Wang, Qin, Liu, X, Li, Y, Song, X, Wang, M, Jiang, Y, Meng, Z, Shao, H and McMinn, A ORCID: 0000-0002-2133-3854 2018 , 'Complete genomic sequence of bacteriophage J2-1: a novel Pseudoalteromonas phenolica phage isolated from the coastal water of Qingdao, China' , Marine Genomics, vol. 39 , pp. 15-18 , doi: 10.1016/j.margen.2017.12.001.

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Abstract

Phage J2-1 was isolated from surface coastal seawater off Qingdao, China in July 2015. It is the first time that a phage active against Pseudoalteromonas phenolica CECT 7645(T) has been isolated. Morphological analysis using transmission electron microscopy revealed that phage J2-1 has an 87 3 nm head, a 111 ± 3 nm long tail and appears to belong to the family Myoviridae. Genomic analysis of J2-1 revealed a genome size of 142,204 bp with 37.92% G + C content and 180 ORFs. Overall the ORF sequences accounted for 89% of the genome sequence. A genome comparison using the BLASTN tool in the NCBI database found no obvious similarity between J2-1 and other known phages.

Item Type: Article
Authors/Creators:Liu, Q and Han, Y and Wang, D and Wang, Qin and Liu, X and Li, Y and Song, X and Wang, M and Jiang, Y and Meng, Z and Shao, H and McMinn, A
Keywords: virus, Qingdao, China, marine, bacteriophage, Pseudoalteromonas, Myoviridae, complete genome
Journal or Publication Title: Marine Genomics
Publisher: Elsevier BV
ISSN: 1874-7787
DOI / ID Number: 10.1016/j.margen.2017.12.001
Copyright Information:

Copyright 2017 Elsevier B.V.

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