Items where Author is "Hamede, R"

Comte, S, Carver, S

, Hamede, R

and Jones, Menna

2020 , 'Changes in spatial organization following an acute epizootic: Tasmanian devils and their transmissible cancer' , Global Ecology and Conservation, vol. 22 , doi: https://doi.org/10.1016/j.gecco.2020.e00993.

Cunningham, CX

, Comte, S, McCallum, H, Hamilton, DG

, Hamede, R

, Storfer, A, Hollings, T, Ruiz-Aravena, M, Kerlin, DH, Brook, BW

, Hocking, G and Jones, Menna

2021 , 'Quantifying 25 years of disease-caused declines in Tasmanian devil populations: host density drives spatial pathogen spread' , Ecology Letters, vol. 24, no. 5 , pp. 958-969 , doi: https://doi.org/10.1111/ele.13703.

Fraik, AK, Margres, MJ, Epstein, B, Barbosa, S, Jones, M

, Hendricks, S, Schonfeld, B, Stahlke, AR, Veillet, A, Hamede, R

, McCallum, H, Lopez-Contreras, E, Kallinen, SJ, Hohenlohe, PA, Kelley, JL and Storfer, A 2020 , 'Disease swamps molecular signatures of genetic-environmental associations to abiotic factors in Tasmanian devil (Sarcophilus harrisii) populations' , Evolution, vol. 74, no. 7 , pp. 1392-1408 , doi: https://doi.org/10.1111/evo.14023.

Fraik, AK, Margres, MJ, Epstein, B, Barbosa, S, Jones, M

, Hendricks, S, Schonfeld, B, Stahlke, AR, Veillet, A, Hamede, R

, McCallum, H, Lopez-Contreras, E, Kallinen, SJ, Hohenlohe, PA, Kelley, JL and Storfer, A 2020 , 'Disease swamps molecular signatures of genetic-environmental associations to abiotic factors in Tasmanian devil (Sarcophilus harrisii) populations' , Evolution, vol. 74, no. 7 , pp. 1392-1408 , doi: https://doi.org/10.1111/evo.14023.

Fraik, AK, Quackenbush, C, Margres, MJ, Comte, S, Hamilton, DG

, Kozakiewicz, CP, Jones, ME

, Hamede, R

, Hohenlohe, PA, Storfer, A and Kelley, JL 2019 , 'Transcriptomics of Tasmanian devil (Sarcophilus harrisii) ear tissue reveals homogeneous gene expression patterns across a heterogeneous landscape' , Genes, vol. 10, no. 10 , pp. 1-15 , doi: https://doi.org/10.3390/genes10100801.

Hamede, R

, Madsen, T, McCallum, H, Storfer, A, Hohenlohe, PA, Siddle, H, Kaufman, J, Giraudeau, M, Jones, ME

, Thomas, T and Ujvari, B 2020 , 'Darwin, the devil, and the management of transmissible cancers' , Conservation Biology , pp. 1-4 , doi: https://doi.org/10.1111/cobi.13644.

Hendricks, S, Epstein, B, Schonfeld, B, Wiench, C, Hamede, R

, Jones, M

, Storfer, A and Hohenlohe, P 2017 , 'Conservation implications of limited genetic diversity and population structure in Tasmanian devils (Sarcophilus harrisii)' , Conservation Genetics, vol. 18, no. 4 , pp. 977-982 , doi: https://doi.org/10.1007/s10592-017-0939-5.

Hendricks, S, Epstein, B, Schonfeld, B, Wiench, C, Hamede, R

, Jones, M

, Storfer, A and Hohenlohe, P 2017 , 'Conservation implications of limited genetic diversity and population structure in Tasmanian devils (Sarcophilus harrisii)' , Conservation Genetics, vol. 18, no. 4 , pp. 977-982 , doi: https://doi.org/10.1007/s10592-017-0939-5.

James, S, Jennings, G, Kwon, YM, Stammnitz, M, Fraik, A, Storfer, A, Comte, S, Pemberton, D, Fox, S, Brown, B, Pye, R

, Woods, G

, Lyons, B

, Hohenlohe, PA, McCallum, H, Siddle, H, Thomas, F, Ujvari, B, Murchison, EP, Jones, M

and Hamede, R

2019 , 'Tracing the rise of malignant cell lines: distribution, epidemiology and evolutionary interactions of two transmissible cancers in Tasmanian devils' , Evolutionary Applications, vol. 12, no. 9 , pp. 1772-1780 , doi: https://doi.org/10.1111/eva.12831.

James, S, Jennings, G, Kwon, YM, Stammnitz, M, Fraik, A, Storfer, A, Comte, S, Pemberton, D, Fox, S, Brown, B, Pye, R

, Woods, G

, Lyons, B

, Hohenlohe, PA, McCallum, H, Siddle, H, Thomas, F, Ujvari, B, Murchison, EP, Jones, M

and Hamede, R

2019 , 'Tracing the rise of malignant cell lines: distribution, epidemiology and evolutionary interactions of two transmissible cancers in Tasmanian devils' , Evolutionary Applications, vol. 12, no. 9 , pp. 1772-1780 , doi: https://doi.org/10.1111/eva.12831.

Kozakiewicz, CP, Fraik, AK, Patton, AH, Ruiz Aravena, M, Hamilton, DG, Hamede, R

, McCallum, H, Hohenlohe, PA, Margres, MJ, Jones, ME

and Storfer, A 2021 , 'Spatial variation in gene expression of Tasmanian devil facial tumors despite minimal host transcriptomic response to infection' , BMC Genomics, vol. 22 , pp. 1-19 , doi: https://doi.org/10.1186/s12864-021-07994-4.

Kozakiewicz, CP, Fraik, AK, Patton, AH, Ruiz Aravena, M, Hamilton, DG, Hamede, R

, McCallum, H, Hohenlohe, PA, Margres, MJ, Jones, ME

and Storfer, A 2021 , 'Spatial variation in gene expression of Tasmanian devil facial tumors despite minimal host transcriptomic response to infection' , BMC Genomics, vol. 22 , pp. 1-19 , doi: https://doi.org/10.1186/s12864-021-07994-4.

Kozakiewicz, CP, Ricci, L, Patton, AH, Stahlke, AR, Hendricks, SA, Margres, MJ, Ruiz Aravena, M, Hamilton, DG, Hamede, R

, McCallum, H, Jones, ME

, Hohenlohe, PA and Storfer, A 2020 , 'Comparative landscape genetics reveals differential effects of environment on host and pathogen genetic structure in Tasmanian devils (Sarcophilus harrisii) and their transmissible tumour' , Molecular Ecology, vol. 29, no. 17 , pp. 3217-3233 , doi: https://doi.org/10.1111/mec.15558.

Kwon, YM, Gori, K, Park, N, Potts, N, Swift, K, Wang, J, Stammnitz, MR, Cannell, N, Baez-Ortega, A, Comte, S, Fox, S, Harmsen, C, Huxtable, S, Jones, M

, Kreiss, A, Lawrence, C, Lazenby, B, Peck, S, Pye, R

, Woods, G

, Zimmermann, M, Wedge, DC, Pemberton, D, Stratton, MR, Hamede, R

and Murchison, EP 2020 , 'Evolution and lineage dynamics of a transmissible cancer in Tasmanian devils' , PLoS Biology, vol. 18, no. 11 , pp. 1-33 , doi: https://doi.org/10.1371/journal.pbio.3000926.

Kwon, YM, Gori, K, Park, N, Potts, N, Swift, K, Wang, J, Stammnitz, MR, Cannell, N, Baez-Ortega, A, Comte, S, Fox, S, Harmsen, C, Huxtable, S, Jones, M

, Kreiss, A, Lawrence, C, Lazenby, B, Peck, S, Pye, R

, Woods, G

, Zimmermann, M, Wedge, DC, Pemberton, D, Stratton, MR, Hamede, R

and Murchison, EP 2020 , 'Evolution and lineage dynamics of a transmissible cancer in Tasmanian devils' , PLoS Biology, vol. 18, no. 11 , pp. 1-33 , doi: https://doi.org/10.1371/journal.pbio.3000926.

Kwon, YM, Stammnitz, MR, Wang, J, Swift, K, Knowles, GW, Pye, RJ

, Kreiss, A, Peck, S, Fox, S, Pemberton, D, Jones, ME

, Hamede, R

and Murchison, EP 2018 , 'Tasman-PCR: A genetic diagnostic assay for Tasmanian devil facial tumour diseases' , Royal Society Open Science, vol. 5, no. 10 , pp. 1-10 , doi: https://doi.org/10.1098/rsos.180870.

Margres, MJ, Jones, ME

, Epstein, B, Kerlin, DH, Comte, S

, Fox, S, Fraik, AK, Hendricks, SA, Huxtable, S, Lachish, S, Lazenby, B, O'Rourke, SM, Stahlke, AR, Wiench, CG, Hamede, R

, Schonfeld, B, McCallum, H, Miller, MR, Hohenlohe, PA and Storfer, A 2018 , 'Large-effect loci affect survival in Tasmanian devils (Sarcophilus harrisii) infected with a transmissible cancer' , Molecular Ecology, vol. 27, no. 21 , pp. 4189-4199 , doi: https://doi.org/10.1111/mec.14853.

Margres, MJ, Jones, ME

, Epstein, B, Kerlin, DH, Comte, S, Fox, S, Fraik, AK, Hendricks, SA, Huxtable, S, Lachish, S, Lazenby, B, O'Rourke, SM, Stahlke, AR, Wiench, CG, Hamede, R

, Schonfeld, B, McCallum, H, Miller, MR, Hohenlohe, PA and Storfer, A 2018 , 'Large-effect loci affect survival in Tasmanian devils (Sarcophilus harrisii) infected with a transmissible cancer' , Molecular Ecology, vol. 27, no. 21 , pp. 4189-4199 , doi: https://doi.org/10.1111/mec.14853.

Margres, MJ, Ruiz Aravena, M, Hamede, R

, Chawla, K, Patton, AH, Lawrance, MF, Fraik, AK, Stahlke, AR, Davis, BW, Ostrander, EA, Jones, ME

, McCallum, H, Paddison, PJ, Hohenlohe, PA, Hockenbery, D and Storfer, A 2020 , 'Spontaneous tumor regression in Tasmanian devils associated with RASL11A activation' , Genetics, vol. 215, no. 4 , pp. 1143-1152 , doi: https://doi.org/10.1534/genetics.120.303428.

Margres, MJ, Ruiz Aravena, M, Hamede, R

, Chawla, K, Patton, AH, Lawrance, MF, Fraik, AK, Stahlke, AR, Davis, BW, Ostrander, EA, Jones, ME

, McCallum, H, Paddison, PJ, Hohenlohe, PA, Hockenbery, D and Storfer, A 2020 , 'Spontaneous tumor regression in Tasmanian devils associated with RASL11A activation' , Genetics, vol. 215, no. 4 , pp. 1143-1152 , doi: https://doi.org/10.1534/genetics.120.303428.

Margres, MJ, Ruiz-Aravena, M, Hamede, R

, Jones, ME

, Lawrance, MF, Hendricks, SA, Patton, A, Davis, BW, Ostrande, EA, McCallum, H, Hohenlohe, PA and Storfer, A 2018 , 'The genomic basis of tumor regression in Tasmanian devils (Sarcophilus harrisii)' , Genome Biology and Evolution, vol. 10, no. 11 , pp. 3012-3025 , doi: https://doi.org/10.1093/gbe/evy229.

Margres, MJ, Ruiz-Aravena, MI

, Hamede, R

, Jones, ME

, Lawrance, MF, Hendricks, SA, Patton, A, Davis, BW, Ostrande, EA, McCallum, H, Hohenlohe, PA and Storfer, A 2018 , 'The genomic basis of tumor regression in Tasmanian devils (Sarcophilus harrisii)' , Genome Biology and Evolution, vol. 10, no. 11 , pp. 3012-3025 , doi: https://doi.org/10.1093/gbe/evy229.

Martin, LB, Addison, B, Bean, AGD, Buchanan, KL, Crino, OL, Eastwood, JR, Flies, AS

, Hamede, R

, Hill, GE, Klaassen, M, Koch, RE, Martens, JM, Napolitano, C, Narayan, EJ, Peacock, L, Peel, AJ, Peters, A, Raven, N, Risely, A, Roast, MJ, Rollins, LA, Ruiz Aravena, M, Selechnik, D, Stokes, HS, Ujvari, B and Grogan, LF 2019 , 'Extreme competence: keystone hosts of infections' , Trends in Ecology and Evolution, vol. 34, no. 4 , pp. 303-314 , doi: https://doi.org/10.1016/j.tree.2018.12.009.

Martin, LB, Addison, B, Bean, AGD, Buchanan, KL, Crino, OL, Eastwood, JR, Flies, AS

, Hamede, R

, Hill, GE, Klaassen, M, Koch, RE, Martens, JM, Napolitano, C, Narayan, EJ, Peacock, L, Peel, AJ, Peters, A, Raven, N, Risely, A, Roast, MJ, Rollins, LA, Ruiz-Aravena, MI

, Selechnik, D, Stokes, HS, Ujvari, B and Grogan, LF 2019 , 'Extreme Competence: Keystone Hosts of Infections' , Trends in Ecology and Evolution, vol. 34, no. 4 , pp. 303-314 , doi: https://doi.org/10.1016/j.tree.2018.12.009.

Patton, AH, Lawrance, MF, Margres, MJ, Kozakiewicz, CP, Hamede, R

, Ruiz Aravena, M, Hamilton, DG, Comte, S, Ricci, LE, Taylor, RL, Stadler, T, Leache, A, McCallum, H, Jones, ME

, Hohenlohe, PA and Storfer, A 2020 , 'A transmissible cancer shifts from emergence to endemism in Tasmanian devils' , Science, vol. 370, no. 6522 , pp. 1-9 , doi: https://doi.org/10.1126/science.abb9772.

Patton, AH, Margres, MJ, Stahlke, AR, Hendricks, S, Lewallen, K, Hamede, R

, Ruiz-Aravena, MI

, Ryder, O, McCallum, HI, Jones, ME

, Hohenlohe, PA and Storfer, A 2019 , 'Contemporary demographic reconstruction methods are robust to genome assembly quality: a case study in Tasmanian devils' , Molecular Biology and Evolution, vol. 36, no. 12 , pp. 2906-2921 , doi: https://doi.org/10.1093/molbev/msz191.

Russell, T, Madsen, T, Thomas, F, Hamede, R

and Ujvari, B 2018 , 'Oncogenesis as a selective force: adaptive evolution in the face of a transmissible cancer' , BioEssays, vol. 40, no. 3 , pp. 1-9 , doi: https://doi.org/10.1002/bies.201700146.

Russell, T, Madsen, T, Thomas, F, Hamede, R

and Ujvari, B 2018 , 'Oncogenesis as a selective force: adaptive evolution in the face of a transmissible cancer' , BioEssays, vol. 40, no. 3 , pp. 1-9 , doi: https://doi.org/10.1002/bies.201700146.

Smith, LE, Jones, ME

, Hamede, R

, Risques, R, Patton, AH, Carter, PA and Storfer, A 2020 , 'Telomere length is a susceptibility marker for Tasmanian devil facial tumor disease' , EcoHealth, vol. 17 , pp. 280-291 , doi: https://doi.org/10.1007/s10393-020-01491-y.

Stahlke, AR, Epstein, B, Barbosa, S, Margres, MJ, Patton, AH, Hendricks, SA, Veillet, A, Fraik, AK, Schonfeld, B, McCallum, HI, Hamede, R

, Jones, ME

, Storfer, A and Hohenlohe, PA 2021 , 'Contemporary and historical selection in Tasmanian devils (Sarcophilus harrisii) support novel, polygenic response to transmissible cancer' , Royal Society of London. Proceedings. Biological Sciences, vol. 288 , pp. 1-10 , doi: https://doi.org/10.1098/rspb.2021.0577.

Thomas, F, Jacqueline, C, Tissot, T, Henard, M, Blanchet, S, Loot, G, Dawson, E, Mary, F, Renaud, F, Montagne, J, Beckmann, C, Biro, PA, Hamede, R

and Ujvari, B 2017 , 'The importance of cancer cells for animal evolutionary ecology' , Nature Ecology and Evolution, vol. 1, no. 11 , pp. 1592-1595 , doi: https://doi.org/10.1038/s41559-017-0343-z.

Thomas, F, Jacqueline, C, Tissot, T, Henard, M, Blanchet, S, Loot, G, Dawson, E, Mary, F, Renaud, F, Montagne, J, Beckmann, C, Biro, PA, Hamede, R

and Ujvari, B 2017 , 'The importance of cancer cells for animal evolutionary ecology' , Nature Ecology and Evolution, vol. 1, no. 11 , pp. 1592-1595 , doi: https://doi.org/10.1038/s41559-017-0343-z.

Thomas, F, Kareva, I, Raven, N, Hamede, R

, Pujol, P, Roche, B and Ujvari, B 2018 , 'Evolved dependence in response to cancer' , Trends in Ecology and Evolution, vol. 33, no. 4 , pp. 1-8 , doi: https://doi.org/10.1016/j.tree.2018.01.012.

Thomas, F, Kareva, I, Raven, N, Hamede, R

, Pujol, P, Roche, B and Ujvari, B 2018 , 'Evolved dependence in response to cancer' , Trends in Ecology and Evolution, vol. 33, no. 4 , pp. 269-276 , doi: https://doi.org/10.1016/j.tree.2018.01.012.

Thomas, F, Kareva, I, Raven, N, Hamede, R

, Pujol, P, Roche, B and Ujvari, B 2018 , 'Evolved dependence in response to cancer' , Trends in Ecology and Evolution, vol. 33, no. 4 , pp. 269-276 , doi: https://doi.org/10.1016/j.tree.2018.01.012.

Thomas, F, Roche, B, Giraudeau, M, Hamede, R

and Ujvari, B 2020 , 'The interface between ecology, evolution, and cancer: More than ever a relevant research direction for both oncologists and ecologists' , Evolutionary Applications, vol. 13, no. 7 , pp. 1545-1549 , doi: https://doi.org/10.1111/eva.13031.

Thomas, F, Vavre, F, Tissot, T, Vittecoq, M, Giraudeau, M, Bernex, F, Misse, D, Renaud, F, Raven, N, Beckmann, C, Hamede, R

, Biro, PA and Ujvari, B 2018 , 'Cancer is not (only) a senescence problem' , Trends in Cancer, vol. 4, no. 3 , pp. 169-172 , doi: https://doi.org/10.1016/j.trecan.2018.01.002.

Thomas, F, Vavre, F, Tissot, T, Vittecoq, M, Giraudeau, M, Bernex, F, Misse, D, Renaud, F, Raven, N, Beckmann, C, Hamede, R

, Biro, PA and Ujvari, B 2018 , 'Cancer is not (only) a senescence problem' , Trends in Cancer, vol. 4, no. 3 , pp. 169-172 , doi: https://doi.org/10.1016/j.trecan.2018.01.002.

Ujvari, B, Klaassen, M, Raven, N, Russell, T, Vittecoq, M, Hamede, R

, Thomas, F and Madsen, T 2018 , 'Genetic diversity, inbreeding and cancer' , Proceedings from the Royal Society of London B- Biological Sciences, vol. 285, no. 1878 , pp. 1-8 , doi: https://doi.org/10.1098/rspb.2017.2589.

Ujvari, B, Klaassen, M, Raven, N, Russell, T, Vittecoq, M, Hamede, R

, Thomas, F and Madsen, T 2018 , 'Genetic diversity, inbreeding and cancer' , Proceedings from the Royal Society of London B: Biological Sciences, vol. 285, no. 1878 , pp. 1-8 , doi: https://doi.org/10.1098/rspb.2017.2589.

Woods, GM

, Fox, S, Flies, A

, Tovar, CD

, Jones, M

, Hamede, R

, Pemberton, D, Lyons, AB

and Bettiol, S

2018 , 'Two decades of the impact of Tasmanian Devil Facial Tumour Disease (DFTD)' , Integrative and Comparative Biology , doi: https://doi.org/10.1093/icb/icy118.

Woods, GM

, Fox, S, Flies, A

, Tovar, CD

, Jones, M

, Hamede, R

, Pemberton, D, Lyons, AB

and Bettiol, S

2018 , 'Two decades of the impact of Tasmanian Devil Facial Tumour Disease (DFTD)' , Integrative and Comparative Biology, vol. 58, no. 6 , pp. 1043-1054 , doi: https://doi.org/10.1093/icb/icy118.

Wright, B, Willet, CE, Hamede, R

, Jones, M

, Belov, K and Wade, CM 2017 , 'Variants in the host genome may inhibit tumour growth in devil facial tumours: evidence from genome-wide association' , Scientific Reports, vol. 7 , pp. 1-6 , doi: https://doi.org/10.1038/s41598-017-00439-7.

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